EnteroBase
  • About EnteroBase
  • Frequently Asked Questions
  • Enterobase Terms and Conditions
  • How EnteroBase uses your personal data (GDPR)
  • Getting Started - Registering and logging in
  • EnteroBase tutorials and worked examples
  • Presentations and Lectures about EnteroBase
  • Key features in Enterobase
    • Introduction
      • Database homepage
      • Searching EnteroBase
      • Using the Browser
      • Metadata Fields
      • Experimental Data
      • AMR analysis
      • LIN® codes
    • Searching and Viewing Results
      • Locus Search
      • Search ST types from alleles
      • Searching Strains by ST or Allele
      • Find similar STs
    • Downloading, editting and uploading data
      • Downloading assemblies
      • Downloading schemes from the website
      • How to download annotations on the EnteroBase website
      • Downloading cgMLST-rMLST profiles from the website
      • Editing strain metadata
      • Adding Reads
    • Advanced features
      • Managing your buddies
      • Minimal Spanning Trees
      • SNP Projects
      • EnteroBase SNPs JBrowse
      • User Space OS and Workspaces
      • User-Defined Content (Custom Views)
      • Searching the Accessory Genome
      • HierCC (Hierarchical Clustering of CgMLST)
      • Monitoring Jobs
  • About schemes within EnteroBase (cg/wg/r/MLST)
  • HierCC (Hierarchical Clustering of CgMLST)
  • GrapeTree Documentation
  • Enterobase API Usage
  • Backend pipelines
  • HierCC equivalents
  • Precomputed species trees
  • Documentation previously on mlst.warwick.ac.uk
  • Developing EnteroBase (Developers only)
EnteroBase
  • Key features in Enterobase
  • View page source

Key features in Enterobase¶

Introduction¶

  • Database homepage
  • Searching EnteroBase
  • Using the Browser
  • Metadata Fields
  • Experimental Data
  • AMR analysis
  • LIN® codes

Searching and Viewing Results¶

  • Locus Search
  • Search ST types from alleles
  • Searching Strains by ST or Allele
  • Find similar STs

Downloading, editting and uploading data¶

  • Downloading assemblies
  • Downloading schemes from the website
  • How to download annotations on the EnteroBase website
  • Downloading cgMLST-rMLST profiles from the website
  • Editing strain metadata
  • Adding Reads

Advanced features¶

  • Managing your buddies
  • Minimal Spanning Trees
  • SNP Projects
  • EnteroBase SNPs JBrowse
  • User Space OS and Workspaces
  • User-Defined Content (Custom Views)
  • Searching the Accessory Genome
  • HierCC (Hierarchical Clustering of CgMLST)
  • Monitoring Jobs
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