Developing EnteroBase (Developers only)

Introduction

• Overview
• Overall Directory Structure
• Installing The Source Code
• User Permissions
• Celery
• EnteroBase API Implementation

Database structure

• EnteroBase Internal Structure (Website)
• Setting a new Database Structure
• Configuration info for metadata and results fields
• EnteroBase Database Structure (NServ)
• Adding a new Database

GUI and displaying results

• Web page generation
• Client grid-based display of results
• Query support
• Custom Views
• JBrowse In Enterobase

Schemes

• Schemes
• Worked example: Adding a scheme/pipeline
• Implemented Schemes

Tools and Pipelines

• Jobs
• Analysis objects - Workspaces
• SNP Projects
• Trees
• MS Trees

Local Enterobase

• Local EnteroBase’s documentation

Maintenance and support

• Maintenance Scripts
• Beta mode operation
• Help files