EnteroBase
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  • About EnteroBase
  • Frequently Asked Questions
  • Enterobase Terms and Conditions
  • How EnteroBase uses your personal data (GDPR)
  • Getting Started - Registering and logging in
  • EnteroBase tutorials and worked examples
  • Presentations and Lectures about EnteroBase
  • About schemes within EnteroBase (cg/wg/r/MLST)
  • HierCC (Hierarchical Clustering of CgMLST)
  • GrapeTree Documentation
  • Key features in Enterobase
  • Enterobase API Usage
  • Backend pipelines
  • HierCC equivalents
  • Precomputed species trees
  • Documentation previously on mlst.warwick.ac.uk
  • Developing EnteroBase (Developers only)
  • Introduction
    • Overview
    • Overall Directory Structure
    • Installing The Source Code
    • User Permissions
    • Celery
    • EnteroBase API Implementation
  • Database structure
    • EnteroBase Internal Structure (Website)
    • Setting a new Database Structure
    • Configuration info for metadata and results fields
    • EnteroBase Database Structure (NServ)
    • Adding a new Database
  • GUI and displaying results
    • Web page generation
    • Client grid-based display of results
    • Query support
    • Custom Views
    • JBrowse In Enterobase
  • Schemes
    • Schemes
    • Worked example: Adding a scheme/pipeline
    • Implemented Schemes
  • Tools and Pipelines
    • Jobs
    • Analysis objects - Workspaces
    • SNP Projects
    • Trees
    • MS Trees
  • Maintenance and support
    • Maintenance Scripts
    • Beta mode operation
    • Help files
  • Local EnteroBase’s documentation
EnteroBase
  • Developing EnteroBase (Developers only)
  • Edit on Bitbucket

Developing EnteroBase (Developers only)¶

Introduction¶

  • Overview
  • Overall Directory Structure
  • Installing The Source Code
  • User Permissions
  • Celery
  • EnteroBase API Implementation

Database structure¶

  • EnteroBase Internal Structure (Website)
  • Setting a new Database Structure
  • Configuration info for metadata and results fields
  • EnteroBase Database Structure (NServ)
  • Adding a new Database

GUI and displaying results¶

  • Web page generation
  • Client grid-based display of results
  • Query support
  • Custom Views
  • JBrowse In Enterobase

Schemes¶

  • Schemes
  • Worked example: Adding a scheme/pipeline
  • Implemented Schemes

Tools and Pipelines¶

  • Jobs
  • Analysis objects - Workspaces
  • SNP Projects
  • Trees
  • MS Trees

Maintenance and support¶

  • Maintenance Scripts
  • Beta mode operation
  • Help files
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