Details of assembly methods and in silico genotyping for Vibrio
All MLST-like typing methods in EnteroBase are derived from a genome assembly of sequenced reads. For an explanation of this method, see here
For a general description of the in silico typing method, see here
Ribosomal MLST (Jolley, 2012) |
Core Genome MLST |
Whole Genome MLST |
|---|---|---|
51 Loci |
1,128 Loci |
152,249 Loci |
Ribosomal proteins |
Core genes |
Any coding sequence |
Highly conserved; Medium resolution |
Variable; High resolution |
Highly variable; Extreme resolution |
Single scheme across tree of life |
Different scheme for each species/genus |
Different scheme for each species/genus |
Ribosomal MLST (rMLST)
rMLST is Copyright © 2010-2016, University of Oxford. rMLST is described in Jolley et al. 2012 Microbiology 158:1005-15.