Details of assembly methods and in silico genotyping for Vibrio

  • All MLST-like typing methods in EnteroBase are derived from a genome assembly of sequenced reads. For an explanation of this method, see here
  • For a general description of the in silico typing method, see here
Ribosomal MLST (Jolley, 2012) Core Genome MLST Whole Genome MLST
51 Loci 1,128 Loci 152,249 Loci
Ribosomal proteins Core genes Any coding sequence
Highly conserved; Medium resolution Variable; High resolution Highly variable; Extreme resolution
Single scheme across tree of life Different scheme for each species/genus Different scheme for each species/genus

Ribosomal MLST (rMLST)