Details of assembly methods and in silico genotyping for Vibrio¶
- All MLST-like typing methods in EnteroBase are derived from a genome assembly of sequenced reads. For an explanation of this method, see here
- For a general description of the in silico typing method, see here
| Ribosomal MLST (Jolley, 2012) | Core Genome MLST | Whole Genome MLST |
|---|---|---|
| 51 Loci | 1,128 Loci | 152,249 Loci |
| Ribosomal proteins | Core genes | Any coding sequence |
| Highly conserved; Medium resolution | Variable; High resolution | Highly variable; Extreme resolution |
| Single scheme across tree of life | Different scheme for each species/genus | Different scheme for each species/genus |
Ribosomal MLST (rMLST)¶
- rMLST is Copyright © 2010-2016, University of Oxford. rMLST is described in Jolley et al. 2012 Microbiology 158:1005-15.