EnteroBase
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About EnteroBase
Frequently Asked Questions
Enterobase Terms and Conditions
How EnteroBase uses your personal data (GDPR)
Getting Started - Registering and logging in
EnteroBase tutorials and worked examples
Presentations and Lectures about EnteroBase
About schemes within EnteroBase (cg/wg/r/MLST)
HierCC (Hierarchical Clustering of CgMLST)
GrapeTree Documentation
Key features in Enterobase
Introduction
Database homepage
Searching EnteroBase
Using the Browser
Metadata Fields
Experimental Data
AMR analysis
Searching and Viewing Results
Locus Search
Search ST types from alleles
Searching Strains by ST or Allele
Find similar STs
Downloading, editting and uploading data
Downloading assemblies
Downloading schemes from the website
How to download annotations on the EnteroBase website
Downloading cgMLST-rMLST profiles from the website
Editing strain metadata
Adding Reads
Advanced features
Managing your buddies
Minimal Spanning Trees
SNP Projects
EnteroBase SNPs JBrowse
User Space OS and Workspaces
User-Defined Content (Custom Views)
Searching the Accessory Genome
HierCC (Hierarchical Clustering of CgMLST)
Monitoring Jobs
Enterobase API Usage
Backend pipelines
HierCC equivalents
Precomputed species trees
Documentation previously on mlst.warwick.ac.uk
Developing EnteroBase (Developers only)
Introduction
Database structure
GUI and displaying results
Schemes
Tools and Pipelines
Maintenance and support
Local EnteroBase’s documentation
EnteroBase
Key features in Enterobase
Edit on Bitbucket
Key features in Enterobase
¶
Introduction
¶
Database homepage
Searching EnteroBase
Using the Browser
Metadata Fields
Experimental Data
AMR analysis
Searching and Viewing Results
¶
Locus Search
Search ST types from alleles
Searching Strains by ST or Allele
Find similar STs
Downloading, editting and uploading data
¶
Downloading assemblies
Downloading schemes from the website
How to download annotations on the EnteroBase website
Downloading cgMLST-rMLST profiles from the website
Editing strain metadata
Adding Reads
Advanced features
¶
Managing your buddies
Minimal Spanning Trees
SNP Projects
EnteroBase SNPs JBrowse
User Space OS and Workspaces
User-Defined Content (Custom Views)
Searching the Accessory Genome
HierCC (Hierarchical Clustering of CgMLST)
Monitoring Jobs
Read the Docs
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